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The selected and unselected icons for MTOM, Reliable Messaging and Security are quite similar. I had to press the icon multiple times to see any noticeable difference. Please make sure that the difference is easily apparent.
See http://blogs.sun.com/arungupta/entry/tango_and_web_service_designer for selected and unselected icons.
*** Issue 105666 has been marked as a duplicate of this issue. ***
after some recent ui changes, there are checkboxes instead of buttons