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When the debugger times out, it suggests that the debugger is not configured, but then refers to the "debugger documentation," but I have no idea where that is. Can't you have a button that takes you to the appropriate help context? My search for information on how to set up the debugger was pretty much fruitless. I'm making this a P2 because it has a very negative impact on the user - you can't use the debugger and you don't know why or how to fix it.
*** Issue 132060 has been marked as a duplicate of this issue. ***
Added link to doc http://hg.netbeans.org/release61-php/rev/9af541ade4e5