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The visual query editor is not that popular, it has a number of issues with it, and is not currently getting any QE or engineering support. For this reason, we should disable it as an action from the Database Explorer until such time we are willing to invest resources into it.
Fixed, revision 8b3954c17b1e See http://hg.netbeans.org/main?cmd=changeset;node=8b3954c17b1e
Move visualsqleditor subcomponents below visualweb