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1/ Specify Package in Generated JSF Pages and Classes in JSF Pages from Entity Class wizard to be different than the Web Application project name. Only <Entity>Controller and <Entity>Converter classes are created in the specified package whereas the others are in the package with its name to be the project name. Some classes are marked with the red exclamation mark icon yet there're no issues with the class files.
What do you mean by "the others"? <Entity>Controller and <Entity>Converter, along with any <Entity>PK classes, are the only classes that should be generated by the wizard. Please give more details, step by step, and attach a project.
"The others" are the other classes than the Controller and Converter. They're some classes generated as well beside those aforementioned. I think it's been already fixed in 127291.
Issue is fixed, according to issue reporter.
v.