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Currently the input's caret inside Output window is just a narrow nonflashing vertical line. Many users will not realize this in fact is a caret where they can input text. It may be easily incorrectly seen as | character. The caret should flash, like the caret in our editor does, to draw users attention. It also should be changed to a bolder line, to not be mistaken for | character.
Partial fix integrated. The caret is now drawn as two vertical lines, not one, so it shows bolder. core/output2/src/org/netbeans/core/output2/ui/AbstractOutputPane.java v 1.42
Decreasing priority to P3.
Reassigning to new module owner Tomas Holy.
Fixed: http://hg.netbeans.org/core-main/rev/67f13ad79b40 or http://hg.netbeans.org/main/rev/67f13ad79b40