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Breakpoint color looks the same that the deleted color used in versioning. Suggest changing the default color to something different than the reb/green used in versioning module. On big files gets confusing.
So this is likely as issue for versioning (or HIE), debugger have traditionally red color for breakpoints.
in options > fonts and colors > diff it is possible to edit the color of removed text in a diff view. Unfortunately we do not use that setting for the editors inline diff. Should be fixed