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PHPUnit allows include_paths to be passed with --include-path. Adding an option to pass the include paths from Netbeans to the PHPunit command line tool would allow developers to setup their own testing enviroment, without touching php.ini. PATH_SEPARATOR could be received with: php -d error_reporting=0 -r "print PATH_SEPARATOR;" (where "php" would be replaced with the path configured in the php settings)