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A similar bug was filed with #216824, but there was little context and it was marked fixed. 'set as main project' is probably more useful (or pertinent) for CND than for Java. But at any rate, when a project is set as 'main project', then project specific actions should apply to that, except when using context menus (i.e., right-clicking on a project). Now 'Build main project' and 'Debug main project' does the right thing. But 'Project Properties', which I have mapped to Alt+P, is tied to the current selection in the 'Projects' pane. Product Version: NetBeans IDE Dev (Build 201609190002) Updates: Updates available Java: 1.8.0_45; Java HotSpot(TM) 64-Bit Server VM 25.45-b02 Runtime: Java(TM) SE Runtime Environment 1.8.0_45-b14 System: Linux version 4.1.13-100.fc21.x86_64 running on amd64; UTF-8; en_US (nb) User directory: /home/toddb/.netbeans/dev Cache directory: /home/toddb/.cache/netbeans/dev